Organized by CSIR–Institute of Genomics & Integrative Biology (IGIB). Supported by Skill India.
Dates
Feb 1-9, 2026
Platform
Zoom (Join)
Time
10:00 AM – 5:00 PM
Organized by:
Jitendra Lab of Bioinformatics and Big Data at
CSIR- Institute of Genomics and Integrative Biology (CSIR-IGIB)
Funded by: Skill India Project (IGIB: HCP002502/2025/E-I) Govt. of INDIA
7-module program from Linux basics to gene enrichment analysis
Learn Linux environment, architecture, file systems, commands, permissions, and processes; hands-on navigation and working with genomic files.
Master shell fundamentals, variables/loops/conditions, text processing with awk/sed/grep.
Understand sequencing platforms, read quality metrics, adapter/GC issues; hands-on FastQC and MultiQC.
Compare de novo vs reference-based assembly, learn assembly strategies; hands-on SPAdes.
Learn gene prediction, functional databases, annotation pipelines; hands-on Prokka workflow.
Understand AMR mechanisms, databases, surveillance; hands-on AMR gene detection and interpretation.
Learn GO/KEGG databases, enrichment statistics; hands-on Chitra Pipeline for GO enrichment and pathway visualization.
← Swipe to explore modules →
Learn Linux environment, architecture, file systems, commands, permissions, and processes; hands-on navigation and working with genomic files.
Master shell fundamentals, variables/loops/conditions, text processing with awk/sed/grep.
Understand sequencing platforms, read quality metrics, adapter/GC issues; hands-on FastQC and MultiQC.
Compare de novo vs reference-based assembly, learn assembly strategies; hands-on SPAdes.
Learn gene prediction, functional databases, annotation pipelines; hands-on Prokka workflow.
Understand AMR mechanisms, databases, surveillance; hands-on AMR gene detection and interpretation.
Learn GO/KEGG databases, enrichment statistics; hands-on Chitra Pipeline for GO enrichment and pathway visualization.
Inauguration & Program Overview
Dr. Jitendra
Introduction to Bioinformatics and its Applications
Dr. Jitendra
System setup and installation
Mukul
Linux Operating System: Architecture & File System
Ajay Bhatia
Practical Session: Basic Linux Commands for Bioinformatics
Ajay Bhatia
Text Processing Tools (grep, awk, sed)
Ajay Bhatia
Introduction to Shell & BASH Scripting
Ajay Bhatia
Command-Line Bioinformatics Tools Overview, Package manager
Ajay Bhatia
Hands-on: Building Simple BASH Pipelines
Ajay Bhatia
Overview of Next Generation Sequencing Technologies
Kaushalendra
NGS Data Formats (FASTQ, SAM, BAM, VCF)
Preeti Agarwal
Quality Control of NGS Data (FastQC, MultiQC)
Mukul
Hands-on: Raw Read Quality Assessment
Mukul
Assembly Quality Assessment with Quast and Reads mapping (Coverage Check)
Mukul
Scaffolding with Ragtag and BUSCO Validation
Mukul
Genome Annotation Concepts, Structural and Functional Annotation, Annotation Tools and Databases (Prokka, RefSeq)
Nity Gritty
Hands-on: Genome Annotation Workflow
Nityendra Shukla
Flash Quiz
Antimicrobial Resistance: Genomic Perspective
Anwesha
AMR Databases (CARD, ResFinder, ARG-ANNOT)
Anwesha
AMR Detection Tools & Interpretation
Anwesha
Hands-on: AMR Gene Identification
Anwesha
Gene Enrichment Analysis Introduction
Ajay Bhatia
Hands-on: Gene Enrichment Analysis
Ajay Bhatia
CHITRA: Hands-on
Pranjal
Feedback, Certificate & Valedictory
Dr. Jitendra
← Swipe to see full schedule →
Meet the distinguished faculty and researchers delivering the training sessions
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Access workshop materials and get in touch with organizers
CSIR-IGIB Email
jitendra.igib@csir.res.inBioinformaticsOnLine
info@bioinformaticsonline.comPhone
+91 7835999528Venue
CSIR- Institute of Genomics and Integrative Biology
Mathura Road Campus
Delhi, India
The CSIR-Institute of Genomics and Integrative Biology is a premier research institute dedicated to advancing genomics and integrative biology research. The institute focuses on translational research in genomics, molecular medicine, and bioinformatics.